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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1783Hypothetical protein. (81 aa)    
Predicted Functional Partners:
amb1780
Cell wall-associated hydrolase.
       0.773
amb1781
Hypothetical protein.
       0.773
amb1782
PRY3 protein.
       0.773
amb1776
Hypothetical protein.
       0.752
amb1777
ATPase involved in DNA repair.
       0.752
amb1778
Uncharacterized conserved protein.
       0.752
amb1779
Hypothetical protein.
       0.752
amb1784
Site-specific DNA methylase.
       0.732
amb1770
Mu-like prophage protein gp36.
       0.499
amb1771
Hypothetical protein.
       0.499
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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