STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1817Uncharacterized NAD(FAD)-dependent dehydrogenase. (379 aa)    
Predicted Functional Partners:
amb2172
Cytochrome subunit of sulfide dehydrogenase.
   
 0.980
amb2173
Uncharacterized NAD(FAD)-dependent dehydrogenase.
  
  
 
0.922
amb3374
Fe-S oxidoreductase.
 
 
 0.922
amb3377
Fe-S-cluster-containing hydrogenase components 1.
  
  
  0.919
amb3375
NADPH-dependent glutamate synthase beta chain and related oxidoreductase.
   
 0.915
amb3378
Hdr-like menaquinol oxidoreductase integral membrane subunit.
  
  
  0.915
metZ
Cystathionine beta-lyase/cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.907
amb0199
Cysteine synthase.
    
 0.905
amb1300
Cysteine synthase.
    
 0.905
amb3367
Sulfite reductase, dissimilatory-type alpha subunit.
    
  0.903
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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