STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1832Arsenical resistance operon trans-acting repressor arsD. (123 aa)    
Predicted Functional Partners:
amb1833
Oxyanion-translocating ATPase; Anion-transporting ATPase; Belongs to the arsA ATPase family.
   
 0.985
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.932
amb1831
Arsenate reductase and related protein; Glutaredoxin family.
    
 0.842
amb1827
Predicted transcriptional regulator.
 
   
 0.810
amb1830
Arsenite efflux pump ACR3 and related permease.
     
 0.797
amb1829
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.775
amb0607
Monomeric isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
  
  
 0.769
mdh
Malate/lactate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.757
amb1828
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.747
amb2145
627aa long 2-oxoacid--ferredoxin oxidoreductasealpha subunit.
  
  
 0.737
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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