STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1843Inner membrane protein involved in colicin E2 resistance. (454 aa)    
Predicted Functional Partners:
amb1842
Beta-glucosidase-related glycosidase.
     
 0.789
amb1841
Hypothetical protein.
     
 0.777
amb1839
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
       0.773
amb1840
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
       0.773
amb1845
Signal transduction histidine kinase.
 
   
 0.688
amb0879
Uncharacterized conserved protein.
   
    0.590
amb1844
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.495
amb1624
Hypothetical protein.
   
    0.407
amb0262
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family.
   
    0.403
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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