STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1850SRPI protein. (317 aa)    
Predicted Functional Partners:
amb1849
Probable cysteine desulfurase 1; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
     0.963
amb1851
Hypothetical protein.
       0.705
amb1852
Serine acetyltransferase.
  
    0.704
amb1055
Hypothetical protein.
 
     0.647
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
  
 0.462
amb1853
EAL domain.
  
    0.453
amb2879
Selenocysteine lyase.
     0.452
amb1148
Hypothetical protein.
    
 0.428
amb2831
Hypothetical protein.
  
 
   0.427
amb3678
Predicted NTPase; NACHT family.
  
     0.422
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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