Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1861Hypothetical protein. (92 aa)    
Predicted Functional Partners:
amb1862
Hypothetical protein.
       0.768
amb1863
ABC-type nitrate/sulfonate/bicarbonate transport systems; Periplasmic components.
       0.507
amb1864
ABC-type nitrate/sulfonate/bicarbonate transport system; Permease component.
       0.507
amb1865
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component.
       0.507
amb1866
Putative intracellular protease/amidase.
       0.507
amb1858
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component.
       0.495
amb1859
ABC-type nitrate/sulfonate/bicarbonate transport system; Permease component.
       0.495
amb1860
ABC-type nitrate/sulfonate/bicarbonate transport systems; Periplasmic components.
       0.495
amb1857
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
       0.491
amb1854
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
       0.476
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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