STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1890Uncharacterized protein containing LysM domain. (229 aa)    
Predicted Functional Partners:
amb1892
Uncharacterized protein; Conserved in bacteria.
 
     0.948
amb1891
Phage protein D.
 
     0.947
amb1888
Hypothetical protein.
 
     0.946
amb1894
Phage baseplate assembly protein W.
 
     0.928
amb1896
Hypothetical protein.
 
     0.925
amb1897
Hypothetical protein.
 
     0.925
amb1903
ATPase of the AAA+ class.
 
     0.921
amb1884
Phage tail sheath protein FI.
  
     0.775
amb1885
Hypothetical protein.
  
     0.775
amb1886
Hypothetical protein.
  
     0.775
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.