Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1949Phenolpthiocerol synthesis polyketide synthase ppsA. (2076 aa)    
Predicted Functional Partners:
amb3584
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
 0.994
amb2105
S-malonyltransferase.
  
 0.993
amb1359
Hypothetical protein.
 0.990
amb1361
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
 0.990
amb2600
Acyl-CoA synthetase/AMP-acid ligase II.
 
 0.990
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
  
 0.985
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
  
 0.985
amb0752
NADPH:quinone reductase and related Zn-dependent oxidoreductase.
 
 
 0.973
amb4555
NADPH:quinone reductase and related Zn-dependent oxidoreductase.
 
 
 0.973
amb2679
NADPH:quinone reductase and related Zn-dependent oxidoreductase.
 
 
 0.972
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (10%) [HD]