STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1964Chemotaxis signal transduction protein. (199 aa)    
Predicted Functional Partners:
amb3004
Gliding motility regulatory protein.
 
 0.996
amb1962
Chemotaxis signal transduction protein.
 
  
 0.990
amb0326
Chemotaxis protein histidine kinase and related kinase.
  
 0.988
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
  
 0.978
amb0325
Chemotaxis signal transduction protein.
  
  
 0.970
amb3654
Hypothetical 1041 kDa protein in hypE 3'region.
 
 
 0.967
amb1963
Methylase of chemotaxis methyl-accepting protein.
 
  
 0.963
amb1965
Methyl-accepting chemotaxis protein.
 
 
 0.962
amb3554
Methyl-accepting chemotaxis protein.
 
 0.960
amb3102
Methyl-accepting chemotaxis protein.
 
 0.959
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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