Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
amb1528 | amb1975 | Hypothetical protein Rv2004c/MT2060/Mb2027c. | Universal stress protein UspA and related nucleotide-binding protein. | 0.468 |
amb1974 | amb1975 | Hypothetical protein. | Universal stress protein UspA and related nucleotide-binding protein. | 0.459 |
amb1975 | amb1528 | Universal stress protein UspA and related nucleotide-binding protein. | Hypothetical protein Rv2004c/MT2060/Mb2027c. | 0.468 |
amb1975 | amb1974 | Universal stress protein UspA and related nucleotide-binding protein. | Hypothetical protein. | 0.459 |
amb1975 | amb2698 | Universal stress protein UspA and related nucleotide-binding protein. | Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.463 |
amb1975 | amb4342 | Universal stress protein UspA and related nucleotide-binding protein. | Hypothetical protein. | 0.440 |
amb1975 | amb4556 | Universal stress protein UspA and related nucleotide-binding protein. | Methylated DNA-protein cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.433 |
amb2698 | amb1975 | Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Universal stress protein UspA and related nucleotide-binding protein. | 0.463 |
amb4342 | amb1975 | Hypothetical protein. | Universal stress protein UspA and related nucleotide-binding protein. | 0.440 |
amb4556 | amb1975 | Methylated DNA-protein cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | Universal stress protein UspA and related nucleotide-binding protein. | 0.433 |