Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1979ABC-type dipeptide transport system; Periplasmic component. (470 aa)    
Predicted Functional Partners:
amb1976
Hypothetical protein.
 
 0.999
amb1977
ABC-type dipeptide/oligopeptide/nickel transport systems; Permease components.
 
 0.999
amb1978
ABC-type dipeptide/oligopeptide/nickel transport systems; Permease components.
 
 0.999
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.888
amb3875
Hypothetical protein.
  
     0.712
amb2145
627aa long 2-oxoacid--ferredoxin oxidoreductasealpha subunit.
  
    0.667
amb4389
ABC-type oligopeptide transport system, periplasmic component.
  
 
0.523
amb0773
ABC-type multidrug transport system, permease component.
  
  
 0.507
amb4386
ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily.
 
  
 0.505
amb4388
ABC-type uncharacterized transport system, permease component.
 
   
 0.478
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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