STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1993Cell surface glycoprotein precursor. (715 aa)    
Predicted Functional Partners:
amb3159
Membrane-fusion protein.
 
  
 0.694
amb4058
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.686
amb3277
RTX toxins and related Ca2+-binding protein.
 
  
 0.682
amb3476
Membrane-fusion protein; Multidrug resistance efflux pump.
 
  
 0.679
amb3275
RTX toxins and related Ca2+-binding protein.
  
     0.671
amb4057
Membrane-fusion protein.
 
  
 0.671
amb2378
Membrane-fusion protein.
 
  
 0.654
amb3276
Outer membrane protein.
 
  
 0.608
amb3272
Hypothetical protein.
 
    0.604
amb2377
ABC-type bacteriocin/lantibiotic exporters; N-terminal double-glycine peptidase domain.
 
  
 0.588
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.