Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1998Hypothetical protein. (270 aa)    
Predicted Functional Partners:
amb1999
Flagellin and related hook-associated protein.
 
  
0.784
amb3159
Membrane-fusion protein.
 
   
 0.656
amb4057
Membrane-fusion protein.
 
   
 0.625
amb3476
Membrane-fusion protein; Multidrug resistance efflux pump.
 
   
 0.623
amb4058
ABC-type protease/lipase transport system, ATPase and permease components.
 
    0.606
amb2378
Membrane-fusion protein.
 
   
 0.595
amb2963
Hypothetical protein.
  
    0.588
amb3276
Outer membrane protein.
  
   
 0.553
amb3272
Hypothetical protein.
  
     0.517
amb3273
Membrane-fusion protein.
  
     0.515
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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