Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
amb1714 | amb2002 | Uncharacterized conserved protein. | Serine/threonine protein kinase. | 0.796 |
amb1721 | amb2002 | Sulfatase modifying factor 2 precursor. | Serine/threonine protein kinase. | 0.440 |
amb2000 | amb2001 | Prophage Qin DNA packaging protein NU1 homolog. | Type V secretory pathway, adhesin AidA. | 0.773 |
amb2000 | amb2002 | Prophage Qin DNA packaging protein NU1 homolog. | Serine/threonine protein kinase. | 0.590 |
amb2000 | amb2003 | Prophage Qin DNA packaging protein NU1 homolog. | Hypothetical protein. | 0.475 |
amb2000 | amb2004 | Prophage Qin DNA packaging protein NU1 homolog. | Nucleoside 2-deoxyribosyltransferase. | 0.423 |
amb2001 | amb2000 | Type V secretory pathway, adhesin AidA. | Prophage Qin DNA packaging protein NU1 homolog. | 0.773 |
amb2001 | amb2002 | Type V secretory pathway, adhesin AidA. | Serine/threonine protein kinase. | 0.611 |
amb2001 | amb2003 | Type V secretory pathway, adhesin AidA. | Hypothetical protein. | 0.475 |
amb2001 | amb2004 | Type V secretory pathway, adhesin AidA. | Nucleoside 2-deoxyribosyltransferase. | 0.423 |
amb2002 | amb1714 | Serine/threonine protein kinase. | Uncharacterized conserved protein. | 0.796 |
amb2002 | amb1721 | Serine/threonine protein kinase. | Sulfatase modifying factor 2 precursor. | 0.440 |
amb2002 | amb2000 | Serine/threonine protein kinase. | Prophage Qin DNA packaging protein NU1 homolog. | 0.590 |
amb2002 | amb2001 | Serine/threonine protein kinase. | Type V secretory pathway, adhesin AidA. | 0.611 |
amb2002 | amb2003 | Serine/threonine protein kinase. | Hypothetical protein. | 0.613 |
amb2002 | amb2004 | Serine/threonine protein kinase. | Nucleoside 2-deoxyribosyltransferase. | 0.539 |
amb2002 | amb2565 | Serine/threonine protein kinase. | Uncharacterized conserved protein. | 0.507 |
amb2002 | amb2663 | Serine/threonine protein kinase. | Uncharacterized conserved protein. | 0.558 |
amb2002 | amb3252 | Serine/threonine protein kinase. | Hypothetical protein. | 0.457 |
amb2003 | amb2000 | Hypothetical protein. | Prophage Qin DNA packaging protein NU1 homolog. | 0.475 |
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