amb2007 protein (Magnetospirillum magneticum)

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amb2007

Protein chain release factor B. (101 aa)

Predicted Functional Partners:

rplU

0.941

rpmA

0.916

rpsP

0.913

rpsL

0.902

rpsG

0.885

rplS

0.883

rpsF

0.877

rpmJ

0.876

rplD

0.872

rpsN

0.871

Your Current Organism:

Magnetospirillum magneticum

NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
amb2007	rplD	amb2007	amb3129	Protein chain release factor B.	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.872
amb2007	rplS	amb2007	amb4066	Protein chain release factor B.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.883
amb2007	rplU	amb2007	amb4077	Protein chain release factor B.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.941
amb2007	rpmA	amb2007	amb4078	Protein chain release factor B.	Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.916
amb2007	rpmJ	amb2007	amb2294	Protein chain release factor B.	Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.876
amb2007	rpsF	amb2007	amb2103	Protein chain release factor B.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.877
amb2007	rpsG	amb2007	amb3134	Protein chain release factor B.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.885
amb2007	rpsL	amb2007	amb3135	Protein chain release factor B.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.902
amb2007	rpsN	amb2007	amb3117	Protein chain release factor B.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.871
amb2007	rpsP	amb2007	amb4063	Protein chain release factor B.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.913
rplD	amb2007	amb3129	amb2007	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Protein chain release factor B.	0.872
rplD	rplS	amb3129	amb4066	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.983
rplD	rplU	amb3129	amb4077	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.989
rplD	rpmA	amb3129	amb4078	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.984
rplD	rpmJ	amb3129	amb2294	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.982
rplD	rpsF	amb3129	amb2103	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.982
rplD	rpsG	amb3129	amb3134	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rplD	rpsL	amb3129	amb3135	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.996
rplD	rpsN	amb3129	amb3117	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.998
rplD	rpsP	amb3129	amb4063	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.984

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