STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2014Phenylacetic acid-responsive transcriptional repressor. (308 aa)    
Predicted Functional Partners:
amb2753
Uncharacterized protein; Possibly involved in aromatic compounds catabolism.
 
   
 0.817
amb2675
Carbonic anhydrase/acetyltransferase; Isoleucine patch superfamily.
  
 0.794
amb0178
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   
 0.697
amb2013
Signal transduction histidine kinase.
 
 
   0.624
amb2755
Coenzyme F390 synthetase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
   
 0.566
amb0173
NAD-dependent aldehyde dehydrogenase.
  
  
 0.533
cobB
NAD-dependent protein deacetylase; SIR2 family; Belongs to the sirtuin family. Class III subfamily.
   
    0.516
amb3766
Hypothetical 1337 kDa protein Y4CA.
   
    0.516
amb1670
ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.456
amb1552
ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.423
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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