Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb2018Transcriptional regulator. (155 aa)    
Predicted Functional Partners:
amb2021
4-hydroxybenzoyl-CoA reductase beta subunit.
 
     0.710
amb2020
4-hydroxybenzoyl-CoA reductase alpha subunit.
 
     0.694
amb2019
4-hydroxybenzoyl-CoA reductase gamma subunit.
       0.651
amb2022
Xanthine and CO dehydrogenase maturation factor; XdhC/CoxF family.
       0.651
fdhD
Uncharacterized protein required for formate dehydrogenase activity; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
       0.527
amb2149
Hypothetical protein.
 
  
 0.461
amb2025
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
   
 0.437
amb0259
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase.
  
  
 0.413
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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