Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb2025Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (644 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 0.961
amb0174
Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.796
amb2028
ABC-type branched-chain amino acid transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
  
    0.774
amb2026
ABC-type branched-chain amino acid transport systems, ATPase component.
       0.773
amb2027
ABC-type branched-chain amino acid transport systems, ATPase component.
       0.773
amb2029
Branched-chain amino acid ABC-type transport system; Permease components; Belongs to the binding-protein-dependent transport system permease family.
       0.773
amb0175
Uncharacterized conserved protein.
  
   
 0.758
amb2030
ABC-type branched-chain amino acid transport systems; Periplasmic component.
 
     0.689
amb0176
Ferredoxin-NADP reductase; Root-type isozyme, chloroplast precursor.
 
 
 
 0.688
amb0172
Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily.
 
 
 0.678
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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