STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2044Type II restriction enzyme; Methylase subunits. (1198 aa)    
Predicted Functional Partners:
amb2043
Hypothetical protein.
 
    0.990
amb2047
Predicted ATP-dependent Lon-type protease.
 
  
 0.979
amb2046
Hypothetical protein.
 
  
 0.973
amb2040
Hypothetical protein.
 
    0.964
amb2038
Hypothetical protein.
 
    0.952
amb2039
Hypothetical protein.
 
  
 0.928
amb0411
Transposase; ISmag2; similar to IS4 family.
  
  
 0.871
amb0356
DNA or RNA helicase of superfamily II.
  
  
 0.618
amb2054
Hypothetical protein.
  
  
 0.475
amb2041
Transposase and inactivated derivative; ISmag6,orf2; similar to IS3 family.
       0.460
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.