Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2057Site-specific DNA methylase. (462 aa)    
Predicted Functional Partners:
amb0481
Site-specific DNA methylase.
  
  
  0.959
amb1784
Site-specific DNA methylase.
  
  
  0.958
amb1631
Site-specific DNA methylase.
  
  
  0.957
amb3681
Site-specific DNA methylase.
  
  
 
0.928
amb2056
Hypothetical protein.
       0.773
amb2058
Hypothetical protein.
       0.773
amb2059
Hypothetical protein.
       0.773
amb2060
Hypothetical protein.
       0.727
amb3279
Hypothetical protein.
  
    0.598
amb2237
Hypothetical protein.
  
     0.571
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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