Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2082DNA repair protein. (110 aa)    
Predicted Functional Partners:
amb3514
Cell shape-determining protein; Involved in formation and maintenance of cell shape.
  
  
 0.777
amb2802
Predicted membrane metal-binding protein.
 
  
 0.690
amb3338
Nucleotide-binding protein implicated in inhibition of septum formation; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.679
amb4548
Nucleotide-binding protein implicated in inhibition of septum formation; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.679
amb1110
Signal transduction histidine kinase.
  
    0.633
amb0620
Signal transduction histidine kinase.
 
    0.605
amb0681
Predicted Rossmann fold nucleotide-binding protein; Involved in DNA uptake.
  
  
 0.601
amb3313
Signal transduction histidine kinase.
 
    0.496
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
   
    0.493
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.493
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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