STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2084Putative protease ydgD precursor. (266 aa)    
Predicted Functional Partners:
amb2083
Predicted nucleoside-diphosphate-sugar epimerase.
       0.773
amb1049
ABC-type phosphate/phosphonate transport system; Periplasmic component.
   
    0.556
amb1105
ABC-type phosphate/phosphonate transport system; Periplasmic component.
   
    0.556
amb3291
Signal transduction histidine kinase.
   
    0.556
amb3460
ABC-type phosphate/phosphonate transport system, periplasmic component.
   
    0.556
amb2505
Hypothetical protein.
  
     0.512
amb4151
Hypothetical protein.
  
     0.494
amb4251
Predicted membrane protein.
   
  
 0.484
amb4492
Kinesin-like protein K39.
 
   
 0.406
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.