Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb2149Hypothetical protein. (326 aa)    
Predicted Functional Partners:
amb2144
Zn-dependent alcohol dehydrogenase.
 
    0.799
amb2143
Dihydroxynaphthoic acid synthase.
 
     0.778
amb2140
B-subunit of benzoyl-CoA reductase.
  
     0.774
amb2141
C-subunit of benzoyl-CoA reductase.
  
     0.773
amb2139
Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain.
 
     0.772
amb2138
D-subunit of benzoyl-CoA reductase.
 
     0.768
amb1241
Phenylacetyl CoA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.746
amb2015
Phenylacetyl CoA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.746
amb2142
Cyclohexa-1,5-dienecarbonyl-CoA hydratase.
 
     0.733
amb0171
Hypothetical protein.
  
     0.611
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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