STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2172Cytochrome subunit of sulfide dehydrogenase. (97 aa)    
Predicted Functional Partners:
amb2173
Uncharacterized NAD(FAD)-dependent dehydrogenase.
 
 
 0.998
amb1817
Uncharacterized NAD(FAD)-dependent dehydrogenase.
   
 0.980
amb3378
Hdr-like menaquinol oxidoreductase integral membrane subunit.
   
 0.933
amb3377
Fe-S-cluster-containing hydrogenase components 1.
   
 0.925
amb3373
Nitrate reductase gamma subunit.
    
 0.906
amb3368
Sulfite reductase, dissimilatory-type beta subunit.
     
 0.903
amb3375
NADPH-dependent glutamate synthase beta chain and related oxidoreductase.
     
 0.903
amb3374
Fe-S oxidoreductase.
    
 0.902
amb3367
Sulfite reductase, dissimilatory-type alpha subunit.
     
 0.901
amb0199
Cysteine synthase.
     
  0.900
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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