STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2224Uncharacterized protein SCO1/SenC/PrrC; Involved in biogenesis of respiratory and photosynthetic systems. (271 aa)    
Predicted Functional Partners:
amb2229
Heme/copper-type cytochrome/quinol oxidase; Subunit 2.
 
 
 0.958
amb2221
Heme/copper-type cytochrome/quinol oxidase, subunit 2.
 
 
 0.948
amb2222
Heme/copper-type cytochrome/quinol oxidase, subunit 1.
 
  
 0.911
amb2225
Cytochrome b subunit of the bc complex.
 
   
 0.893
ctaB2
Polyprenyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.870
amb2218
Thiol-disulfide isomerase and thioredoxins.
 
 
 0.798
amb2227
Heme/copper-type cytochrome/quinol oxidase; Subunit 1.
  
  
 0.745
amb2228
Hypothetical protein.
  
  
 0.745
ctaA
Uncharacterized protein required for cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
 
 
 0.723
amb3088
Thiol-disulfide isomerase and thioredoxins.
 
 
 0.722
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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