STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2240TPR repeat; SEL1 subfamily. (556 aa)    
Predicted Functional Partners:
amb4019
Predicted methyltransferase; TPR repeat.
 
 
 
 0.861
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
  
 
 0.855
hscA
Molecular chaperone; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
 
 
 0.793
amb2241
Methyl-accepting chemotaxis protein.
       0.773
amb4181
Hypothetical protein.
 
 
 0.767
amb3878
Sensor protein gacS.
  
 
 0.766
amb0557
TPR repeat; SEL1 subfamily.
 
 
 
 0.756
amb1418
Predicted membrane protein.
 
 0.749
amb1695
Ankyrin repeat.
  
 0.748
amb2961
Hypothetical protein.
  
 
 0.746
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.