STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2248FOG: PAS/PAC domain. (642 aa)    
Predicted Functional Partners:
amb3312
PvrR.
 
 0.986
amb2166
PvrR.
 
 0.983
amb3093
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 0.982
amb4099
FOG: EAL domain.
 
 0.977
amb3300
Predicted signal transduction protein containing sensor and EAL domains.
 
 0.976
amb1110
Signal transduction histidine kinase.
  
 
 0.875
amb2930
Sensor protein barA.
  
 
 0.862
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 
0.846
amb0915
EAL domain.
 
 0.843
amb0770
EAL domain.
 
 
 0.835
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.