Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb2282Uptake hydrogenase. (442 aa)    
Predicted Functional Partners:
amb1943
Uptake hydrogenase.
 
 
 0.979
amb2284
Response regulator containing CheY-like receiver; AAA-type ATPase, and DNA-binding domains.
 
 
 0.978
amb1942
Uptake hydrogenase.
 
 
 0.976
amb1115
Ni,Fe-hydrogenase I small subunit.
 
 
 0.974
amb1644
Ni,Fe-hydrogenase I large subunit.
 
  
  0.965
amb1114
Ni,Fe-hydrogenase I large subunit.
 
 
 0.963
amb2930
Sensor protein barA.
 
 
 0.944
amb1947
Predicted ATPase.
 
 
 0.922
amb1110
Signal transduction histidine kinase.
 
 
 0.921
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
 0.916
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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