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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2284Response regulator containing CheY-like receiver; AAA-type ATPase, and DNA-binding domains. (479 aa)    
Predicted Functional Partners:
amb2282
Uptake hydrogenase.
 
 0.980
amb3937
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.776
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.708
amb1943
Uptake hydrogenase.
  
   
 0.696
amb1872
PAS/PAC domain.
 
 
 0.683
amb1942
Uptake hydrogenase.
  
   
 0.654
amb0496
ATPase involved in chromosome partitioning.
  
 
 0.640
amb1466
Predicted ATPase.
 
 
 0.609
amb1947
Predicted ATPase.
 
 
 0.609
amb2936
Predicted ATPase.
 
 
 0.609
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.