Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2292Predicted Fe-S oxidoreductase. (442 aa)    
Predicted Functional Partners:
amb2293
Signal transduction histidine kinase.
 
   
 0.622
amb3257
Predicted Fe-S oxidoreductase.
  
     0.577
amb0046
Predicted Fe-S oxidoreductase.
  
     0.557
amb3878
Sensor protein gacS.
 
 
 0.542
amb2236
TPR repeat.
 
 
 
 0.525
amb1795
Arylsulfatase regulator.
 
   
 0.511
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
  
 0.509
amb1682
Hypothetical protein.
 
  
 0.490
amb1408
Nitrite reductase precursor.
 
  
 0.483
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
  
 
 0.471
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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