STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2293Signal transduction histidine kinase. (1196 aa)    
Predicted Functional Partners:
amb1116
Serine phosphatase RsbU regulator sigma subunit.
 
 
0.977
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
 
  
 0.970
amb1110
Signal transduction histidine kinase.
 
 
0.970
amb3878
Sensor protein gacS.
 
 
0.967
amb1432
Signal transduction histidine kinase.
 
 
0.963
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
  
  
 0.962
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
0.960
amb1841
Hypothetical protein.
 
 
0.959
amb2930
Sensor protein barA.
 
 
0.959
amb4146
Signal transduction histidine kinase.
 
 
0.959
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.