Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2357SPY protein. (798 aa)    
Predicted Functional Partners:
amb0688
TPR repeat.
     0.672
amb0435
Ice nucleation protein.
 
     0.618
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
 
0.615
amb2653
Uncharacterized protein; Conserved in bacteria.
   
 0.601
amb1269
Mucin 4.
 
     0.594
amb3790
Large exoprotein involved in heme utilization or adhesion.
 
     0.573
amb3060
FOG: TPR repeat.
 
 
 
0.564
amb2156
Hypothetical protein.
 
 
 
0.553
amb3871
FOG: TPR repeat.
   
0.545
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
   
 
 0.543
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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