Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2412Cell wall hydrolyses involved in spore germination. (165 aa)    
Predicted Functional Partners:
amb2413
Hypothetical protein.
       0.773
amb2414
Hypothetical protein.
       0.773
amb2415
Hypothetical protein.
       0.773
amb2416
Hypothetical protein.
       0.746
amb2417
Hypothetical protein.
       0.746
amb4281
Hypothetical protein.
 
     0.657
amb4233
Hypothetical protein.
 
     0.622
amb4270
Hypothetical protein.
 
     0.599
amb4267
Hypothetical protein.
 
     0.579
amb4275
Hypothetical protein.
 
     0.563
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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