STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2499Murein endopeptidase. (280 aa)    
Predicted Functional Partners:
amb2500
HD-GYP domain.
       0.778
amb2206
Uncharacterized protein conserved in bacteria.
  
   
 0.711
glk
Glucokinase; Belongs to the bacterial glucokinase family.
      0.585
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
  
 0.565
amb2207
Uncharacterized protein conserved in bacteria.
 
     0.527
amb2501
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
       0.469
rpsB
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.463
amb4483
Uncharacterized protein conserved in bacteria.
  
     0.450
amb1615
Uncharacterized protein; Conserved in bacteria.
   
    0.402
amb2700
Ribonuclease I; Belongs to the RNase T2 family.
  
   
 0.401
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.