Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2503Predicted phosphohydrolase. (265 aa)    
Predicted Functional Partners:
amb2502
Sphingosine kinase and enzyme related to eukaryotic diacylglycerol kinase.
 
     0.948
mamU
Sphingosine kinase and enzyme; Might phosphorylate lipids; Belongs to the diacylglycerol/lipid kinase family.
 
     0.777
amb2504
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
       0.498
amb1695
Ankyrin repeat.
   
 
 0.438
amb1466
Predicted ATPase.
     
 0.430
amb1947
Predicted ATPase.
     
 0.430
amb2936
Predicted ATPase.
     
 0.430
amb0463
Hypothetical protein.
   
 
 0.420
amb0874
Hypothetical protein.
   
 
 0.420
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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