Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
amb0833 | amb0834 | amb0833 | amb0834 | Hypothetical protein. | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | 0.994 |
amb0833 | argS | amb0833 | amb2529 | Hypothetical protein. | Arginyl-tRNA synthetase. | 0.911 |
amb0833 | gltX1 | amb0833 | amb1235 | Hypothetical protein. | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.833 |
amb0833 | gltX2 | amb0833 | amb2803 | Hypothetical protein. | Glutamyl- and glutaminyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.867 |
amb0833 | guaA | amb0833 | amb0732 | Hypothetical protein. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.648 |
amb0833 | leuS | amb0833 | amb0027 | Hypothetical protein. | Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.891 |
amb0833 | metG | amb0833 | amb2448 | Hypothetical protein. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.874 |
amb0833 | pheT | amb0833 | amb4380 | Hypothetical protein. | Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.939 |
amb0833 | proS | amb0833 | amb3636 | Hypothetical protein. | Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.947 |
amb0833 | pyrG | amb0833 | amb1821 | Hypothetical protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.555 |
amb0834 | amb0833 | amb0834 | amb0833 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Hypothetical protein. | 0.994 |
amb0834 | argS | amb0834 | amb2529 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Arginyl-tRNA synthetase. | 0.908 |
amb0834 | gltX1 | amb0834 | amb1235 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.833 |
amb0834 | gltX2 | amb0834 | amb2803 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Glutamyl- and glutaminyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.864 |
amb0834 | guaA | amb0834 | amb0732 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.648 |
amb0834 | leuS | amb0834 | amb0027 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.918 |
amb0834 | metG | amb0834 | amb2448 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.864 |
amb0834 | pheT | amb0834 | amb4380 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.939 |
amb0834 | proS | amb0834 | amb3636 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.947 |
amb0834 | pyrG | amb0834 | amb1821 | Valyl-tRNA synthetase; Leucyl-tRNA synthetase. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.555 |
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