STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2530FOG: GGDEF domain. (386 aa)    
Predicted Functional Partners:
amb1840
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
    0.918
amb4144
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
    0.915
amb1839
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
    0.908
amb1370
Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
  
 0.901
amb3093
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 0.897
amb3312
PvrR.
  
 0.878
amb2166
PvrR.
  
 0.813
amb4099
FOG: EAL domain.
 
  
 0.799
amb3300
Predicted signal transduction protein containing sensor and EAL domains.
 
  
 0.798
amb1414
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 0.789
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.