Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb2546Signal transduction histidine kinase. (847 aa)    
Predicted Functional Partners:
amb0918
CheY-like receiver.
 
 0.859
amb2293
Signal transduction histidine kinase.
 
 
0.828
amb3570
FOG: CheY-like receiver.
 
 
 
 0.822
amb1110
Signal transduction histidine kinase.
 
 
0.812
amb0948
CheY-like receiver.
  
   0.797
amb3401
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.777
amb3438
Sensor protein gacS.
 
 
0.771
amb1841
Hypothetical protein.
 
 
0.770
amb4100
FOG: CheY-like receiver.
  
 
   0.770
amb4146
Signal transduction histidine kinase.
 
 
0.770
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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