Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb2557Hypothetical protein yfiQ. (903 aa)    
Predicted Functional Partners:
amb2556
Phosphotransacetylase.
  
  
 0.758
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.671
rnc
dsRNA-specific ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.610
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.587
amb2149
Hypothetical protein.
  
 
 0.585
amb2558
Flagellar motor component.
       0.576
amb0074
Acetyltransferase; Isoleucine patch superfamily.
  
  
 0.572
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.560
amb2559
Flagellar motor protein.
       0.544
amb2145
627aa long 2-oxoacid--ferredoxin oxidoreductasealpha subunit.
  
 
 0.505
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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