STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2566SAM-dependent methyltransferase. (269 aa)    
Predicted Functional Partners:
amb2567
Exo-beta-1,3-glucanase.
       0.773
amb0688
TPR repeat.
     0.682
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.682
amb3060
FOG: TPR repeat.
     0.596
amb3871
FOG: TPR repeat.
    0.589
amb1322
Hypothetical protein.
    
 0.575
amb2568
Conserved secreted protein.
       0.483
amb2569
DNA polymerase III, alpha subunit.
       0.483
amb2136
TPR repeat.
 
     0.452
amb4019
Predicted methyltransferase; TPR repeat.
   
 
 0.407
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.