Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2566SAM-dependent methyltransferase. (269 aa)    
Predicted Functional Partners:
amb2567
Exo-beta-1,3-glucanase.
       0.773
amb0688
TPR repeat.
     0.681
amb3060
FOG: TPR repeat.
     0.596
amb3871
FOG: TPR repeat.
    0.588
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.579
amb1322
Hypothetical protein.
    
 0.572
amb2569
DNA polymerase III, alpha subunit.
     
 0.506
amb2568
Conserved secreted protein.
       0.483
amb2136
TPR repeat.
 
     0.452
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.414
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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