Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2580Predicted membrane protein/domain. (173 aa)    
Predicted Functional Partners:
amb2579
Flagellar motor protein.
  
    0.799
amb4447
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit.
  
    0.745
amb0611
Hypothetical protein CC0952.
 
   
 0.732
amb2578
Flagellar motor component.
       0.706
amb3828
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
   0.695
amb2893
Periplasmic protein TonB, links inner and outer membranes.
  
     0.679
bpt
Putative arginyl-tRNA:protein arginylyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
     
 0.657
amb1418
Predicted membrane protein.
 
   
 0.632
amb0501
FlbE protein.
  
   
 0.541
amb3051
Transcriptional regulator.
 
    0.514
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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