STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2589Enoyl-CoA hydratase/carnithine racemase. (272 aa)    
Predicted Functional Partners:
amb2588
Acyl-CoA dehydrogenase.
 0.959
amb3902
3-hydroxyacyl-CoA dehydrogenase.
 
 0.957
amb2587
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
 
 0.913
amb2596
3-hydroxyacyl-CoA dehydrogenase.
 0.836
amb2591
Enoyl-CoA hydratase/carnithine racemase.
 
  
0.823
amb2262
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
 
 0.795
amb2148
Putative translation initiation inhibitor; yjgF family.
 
     0.787
amb0177
Predicted thioesterase.
 
    0.786
amb2590
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
  
 0.740
amb2595
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.733
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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