Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb2598Transcriptional regulator. (270 aa)    
Predicted Functional Partners:
amb2995
Allophanate hydrolase subunit 1.
  
  
 0.874
amb2996
Allophanate hydrolase subunit 2.
  
  
 0.858
amb2600
Acyl-CoA synthetase/AMP-acid ligase II.
 
 
 0.750
amb2595
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.719
amb2599
Acyl-CoA dehydrogenase.
 
     0.696
amb2596
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.682
amb2601
ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.652
amb2606
Uncharacterized protein; Possibly involved in aromatic compounds catabolism.
 
    0.618
pxpA
Uncharacterized protein, homolog of lactam utilization protein B; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.586
amb2597
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.543
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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