STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2600Acyl-CoA synthetase/AMP-acid ligase II. (517 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 0.990
amb1360
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.953
amb3589
Long-chain acyl-CoA synthetase.
 
 
0.922
amb1359
Hypothetical protein.
 
    
0.834
amb2599
Acyl-CoA dehydrogenase.
  
  
 0.795
amb2598
Transcriptional regulator.
 
 
 0.750
amb2601
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.718
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
    
 
 0.676
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
    
 
 0.676
amb2105
S-malonyltransferase.
    
 0.658
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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