STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2607Dioxygenase related to 2-nitropropane dioxygenase. (351 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 
 0.872
amb2609
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
  
    0.791
amb2608
Hypothetical protein.
       0.780
amb2606
Uncharacterized protein; Possibly involved in aromatic compounds catabolism.
 
     0.692
amb2602
Branched-chain amino acid ABC-type transport system; Permease components; Belongs to the binding-protein-dependent transport system permease family.
  
    0.611
amb2603
ABC-type branched-chain amino acid transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
  
    0.611
amb2604
ABC-type branched-chain amino acid transport systems, ATPase component.
       0.608
amb2605
ABC-type branched-chain amino acid transport systems; ATPase component.
       0.608
amb2108
3-oxoacyl-(acyl-carrier-protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  
 0.604
amb2105
S-malonyltransferase.
 
  
 0.559
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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