Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb2626Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (554 aa)    
Predicted Functional Partners:
amb2627
Predicted membrane protein.
  
 0.982
amb1545
Predicted membrane protein.
 
  
 0.914
amb2729
Predicted membrane protein.
 
  
 0.912
amb1544
Predicted signal-transduction protein containing cAMP-binding and CBS domains.
 
  
 0.718
amb2628
Signal transduction histidine kinase.
       0.484
potA
ABC-type spermidine/putrescine transport systems; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 0.454
amb2621
Kef-type K+ transport systems; Membrane components.
       0.453
amb2629
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.437
amb2625
Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
    0.436
amb2622
ABC-type spermidine/putrescine transport system; Permease component II.
       0.435
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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