Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
amb2658Hypothetical protein. (244 aa)    
Predicted Functional Partners:
amb2657
Hypothetical protein.
  
 
 0.912
amb1110
Signal transduction histidine kinase.
  
  
 0.836
amb1711
Hypothetical protein.
  
 
 0.769
amb3537
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.753
amb1432
Signal transduction histidine kinase.
  
  
 0.723
amb0614
Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.704
flgH
Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.704
amb3500
FlaA locus 229 kDa protein.
   
    0.704
amb3827
Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
   
    0.704
amb3829
FlbT protein.
   
    0.704
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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