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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2675Carbonic anhydrase/acetyltransferase; Isoleucine patch superfamily. (205 aa)    
Predicted Functional Partners:
amb2014
Phenylacetic acid-responsive transcriptional repressor.
  
 0.794
amb2676
Predicted thioesterase.
       0.780
amb2677
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
       0.773
amb4241
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.739
cbbM
Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
    
 
 0.735
amb0864
Hypothetical protein.
    
 
 0.649
amb2678
Hypothetical protein.
       0.598
amb2679
NADPH:quinone reductase and related Zn-dependent oxidoreductase.
     
 0.462
amb1265
Dihydroorotase and related cyclic amidohydrolase.
  
  
 0.445
pyrC
Dihydroorotase and related cyclic amidohydrolase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
  
 0.433
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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