STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2676Predicted thioesterase. (147 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 
 0.945
amb2677
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
     
 0.781
amb2675
Carbonic anhydrase/acetyltransferase; Isoleucine patch superfamily.
       0.777
amb2678
Hypothetical protein.
       0.598
amb2679
NADPH:quinone reductase and related Zn-dependent oxidoreductase.
       0.450
amb2105
S-malonyltransferase.
  
  
 0.445
amb0031
NAD-specific glutamate dehydrogenase.
  
    0.443
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.418
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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