STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2680Uncharacterized protein; Conserved in bacteria. (193 aa)    
Predicted Functional Partners:
lysS
Lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.782
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
      0.761
amb1330
Uncharacterized protein; Conserved in bacteria.
  
   
 0.758
amb2296
Uncharacterized protein conserved in bacteria.
  
   
 0.750
amb4543
Uncharacterized protein; Conserved in bacteria.
  
     0.731
amb0781
Predicted transcriptional regulator.
  
     0.701
amb4437
Dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
    0.690
amb3562
Predicted transcriptional regulator.
  
     0.674
amb4361
Predicted transcriptional regulator.
  
     0.671
amb1746
Predicted transcriptional regulator.
  
     0.664
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.